NFC pins configured as GPIO will short together

The NFC pins of my nRF52840 MCU have been set to be used as GPIO pins through the NFCPINS register.  I can toggle the GPIO lines just but I find that after power on that the two NFC pins seem to be shorted internally together, for about 1 millisecond.  How can I prevent this from happening because the NFC/GPIO pins drive some critical circuitry that can't tolerate the apparent 1ms pulse.

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